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This was carried out by searching for the longest continuous mapping region in a BLAT mapping of a tandem copy of the consensus sequence against the reference transcriptome. The consensus sequence was then reorganized to start from the identified ligation …

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A blast furnace is a type of metallurgical furnace used for smelting to produce industrial metals, generally pig iron, but also others such as lead or copper. Blast refers to the combustion air being "forced" or supplied above atmospheric pressure.

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Mar 03, 2016· General isoform expression characteristics across 819 breast samples. In order to begin to study the complexity of mRNA isoform diversity, we used the isoform level expression data from 728 breast tumors and 91 normal breast tissues from TCGA breast data set (TCGA BRCA) [19, 20].The summary of patient characteristics for this sample set is presented in Additional file 1: Table S1.

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Mar 03, 2011· I started testing alternatives to BLAST for aligning Illumina reads to a genomic sequence (Haemophilus influenzae L42023.1).When first setting up the project, I should have remembered how much faster BLAT is than BLAST. But I only needed to run the search once.

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Once the nine genes that emerge from the RNA functional validation analysis are added to the list of genes to be considered in the analysis, the PPI network is expanded and includes six of these genes. In this iteration of the analysis, both the Direct Edeg Count (=0.0072) and Common Interactors Degrees Mean (p=0.042) measures remain significant.

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Deciphering the forces and mechanisms modulating genome size is central to our understanding of molecular evolution, but the subject has been understudied in mammals and birds. We took advantage of the recent availability of genome sequences for a wide range of species to investigate the mechanism underlying genome size equilibrium over the past 100 million years. Our data provide evidence for ...

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